
This blackberry lime cheesecake cupcake recipe combines the perfect balance of tart lime and sweet blackberries in a miniature cheesecake form. The creamy filling sits atop a buttery graham cracker crust for an elegant dessert that looks as beautiful as it tastes.
I first created these for my sister's garden party and they disappeared within minutes. The contrast between the rich cheesecake, bright lime, and sweet blackberries creates a dessert that guests can't resist asking about.
Ingredients
- Graham cracker crumbs: Form the perfect crunchy base that complements the creamy filling
- Cream cheese: Provides the signature tangy richness essential for authentic cheesecake flavor
- Fresh lime juice: Adds brightness that cuts through the richness
- Blackberry jam: Creates pockets of sweet fruit flavor throughout
- Fresh blackberries: Offer vibrant color and a burst of fresh flavor in every bite
- Heavy cream: Whipped to soft peaks creates a light cloud-like topping
- Lime zest: Adds intense citrus aroma and visual appeal
Step-by-Step Instructions
- Prepare the Crust:
- Mix graham cracker crumbs with melted butter until the consistency resembles wet sand. Press approximately two tablespoons into each cupcake liner, using the bottom of a small glass to create an even, compact layer. The more firmly you press, the better your crust will hold together when serving.
- Create the Filling:
- Beat softened cream cheese until completely smooth with no lumps remaining, about 2 minutes on medium speed. Add sugar gradually while continuing to beat. The mixture should become lighter in texture. Add eggs one at a time, fully incorporating each egg before adding the next. Finally, add vanilla and lime juice, mixing just until combined. Overmixing at this stage can incorporate too much air and cause cracks.
- Layer the Components:
- Spoon a tablespoon of blackberry jam onto each graham cracker crust, gently spreading it with the back of a spoon but leaving some space around the edges. This creates a beautiful jam layer that will be visible when you bite into the cupcake. Carefully pour or spoon the cream cheese mixture over the jam, filling each liner about three quarters full.
- Bake to Perfection:
- Bake at 325°F for exactly 20 to 25 minutes. The centers should be just slightly jiggly when you remove them from the oven. They will continue cooking from residual heat and then set as they cool. Allow the cupcakes to cool completely at room temperature before refrigerating.
- Add the Finishing Touches:
- Whip heavy cream to stiff peaks, being careful not to overwhip which can make it grainy. Dollop or pipe the cream onto the chilled cupcakes and garnish with fresh blackberries and a sprinkle of lime zest just before serving for the most vibrant presentation.

I discovered the magic of adding lime to blackberry desserts during a summer vacation in Oregon where blackberries grow wild. The citrus brightness completely transforms the berry flavor, making it more complex and interesting than sweet alone.
Make Ahead Magic
These cheesecake cupcakes actually improve with time as the flavors meld together in the refrigerator. You can make them up to two days in advance and store covered in the refrigerator. I recommend adding the whipped cream topping and fresh garnishes just before serving for the best presentation. This makes them perfect for entertaining when you want to prepare dessert well ahead of your guests arriving.
Perfect Blackberry Selection
When selecting blackberries for this recipe, look for berries that are deep purple black with a slight glossy sheen. They should be plump and firm with no mushy spots or mold. If using frozen berries for the garnish, do not thaw them before placing on top of the whipped cream as they will release too much juice and color bleed into your topping. The best blackberries have a balance of sweetness and tartness that complements the lime perfectly.
Seasonal Adaptations
While blackberry and lime create a wonderful pairing, this recipe can be adapted throughout the year using seasonal fruits. In summer, try fresh raspberries or blueberries with the same lime base. In fall, substitute with cranberry and orange for a holiday variation. Spring calls for strawberry and lemon. The technique remains the same while the flavor combinations keep this recipe fresh and exciting all year round.
Creative Serving Ideas
Transform these cupcakes into an impressive dessert table centerpiece by arranging them on a tiered stand with fresh blackberries and lime slices scattered around. For a dinner party, serve individual cupcakes on small dessert plates with a drizzle of blackberry coulis and a sprig of fresh mint. You can also create a deconstructed version by crumbling the cupcakes and layering the components in clear glasses for an elegant trifle style presentation.
Frequently Asked Questions
- → Can I use frozen blackberries instead of fresh?
Yes, frozen blackberries can be used, but make sure to thaw them fully and pat them dry before using to prevent excess moisture.
- → How do I make the cupcakes gluten-free?
Substitute the graham cracker crumbs with gluten-free graham crackers or any gluten-free cookie crumbs for a similar texture.
- → How long should I chill the cupcakes?
Chill the cupcakes for at least 2 hours to allow the flavors to meld and the cheesecake filling to set properly.
- → Can I substitute lime juice with another citrus fruit?
Yes, you can use lemon juice for a slightly different flavor profile, but lime complements the blackberries perfectly.
- → How do I ensure the filling is smooth?
Ensure the cream cheese is softened at room temperature and thoroughly mixed to avoid lumps in the cheesecake filling.